APT55899.1 protein (Roseomonas gilardii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APT55899.1

Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (105 aa)

Predicted Functional Partners:

APT55898.1

0.707

APT55897.1

0.619

APT55894.1

0.608

APT55896.1

0.507

APT60045.1

0.407

Your Current Organism:

Roseomonas gilardii

NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT55894.1	APT55896.1	RGI145_00955	RGI145_00965	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
APT55894.1	APT55897.1	RGI145_00955	RGI145_00970	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
APT55894.1	APT55898.1	RGI145_00955	RGI145_00975	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APT55894.1	APT55899.1	RGI145_00955	RGI145_00980	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
APT55896.1	APT55894.1	RGI145_00965	RGI145_00955	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.532
APT55896.1	APT55897.1	RGI145_00965	RGI145_00970	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
APT55896.1	APT55898.1	RGI145_00965	RGI145_00975	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
APT55896.1	APT55899.1	RGI145_00965	RGI145_00980	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
APT55897.1	APT55894.1	RGI145_00970	RGI145_00955	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.877
APT55897.1	APT55896.1	RGI145_00970	RGI145_00965	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.598
APT55897.1	APT55898.1	RGI145_00970	RGI145_00975	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
APT55897.1	APT55899.1	RGI145_00970	RGI145_00980	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
APT55898.1	APT55894.1	RGI145_00975	RGI145_00955	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.766
APT55898.1	APT55896.1	RGI145_00975	RGI145_00965	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.643
APT55898.1	APT55897.1	RGI145_00975	RGI145_00970	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.851
APT55898.1	APT55899.1	RGI145_00975	RGI145_00980	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707
APT55899.1	APT55894.1	RGI145_00980	RGI145_00955	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	3-hydroxyacyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.608
APT55899.1	APT55896.1	RGI145_00980	RGI145_00965	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.507
APT55899.1	APT55897.1	RGI145_00980	RGI145_00970	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dicarboxylate--CoA ligase PimA; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.619
APT55899.1	APT55898.1	RGI145_00980	RGI145_00975	Sterol-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.707