STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT56153.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (519 aa)    
Predicted Functional Partners:
APT56154.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.928
APT59030.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.893
APT58853.1
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.760
APT56155.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
  
    0.738
APT58376.1
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.736
APT58852.1
Glutathione ABC transporter permease GsiC; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.723
APT56156.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.719
APT56067.1
Glutathione ABC transporter permease GsiD; With GsiABD is involved in the transport of glutathione into the cell; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.694
APT56157.1
Nitrilotriacetate monooxygenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.694
APT59442.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.684
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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