Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APT56517.1 | APT57165.1 | RGI145_04760 | RGI145_08715 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.915 |
| APT56517.1 | APT57692.1 | RGI145_04760 | RGI145_11835 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.923 |
| APT56517.1 | APT58768.1 | RGI145_04760 | RGI145_18295 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. | 0.917 |
| APT56517.1 | argB | RGI145_04760 | RGI145_07090 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.976 |
| APT56517.1 | argD | RGI145_04760 | RGI145_04755 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Acetylornithine transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.996 |
| APT56517.1 | argG | RGI145_04760 | RGI145_01655 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Argininosuccinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.997 |
| APT56517.1 | argH | RGI145_04760 | RGI145_16415 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Argininosuccinate lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.995 |
| APT56517.1 | argJ | RGI145_04760 | RGI145_12485 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.995 |
| APT56517.1 | carA | RGI145_04760 | RGI145_13590 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Carbamoyl phosphate synthase small subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarA family. | 0.990 |
| APT56517.1 | carB | RGI145_04760 | RGI145_13605 | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | Carbamoyl phosphate synthase large subunit; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CarB family. | 0.991 |
| APT57165.1 | APT56517.1 | RGI145_08715 | RGI145_04760 | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.915 |
| APT57165.1 | APT57692.1 | RGI145_08715 | RGI145_11835 | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.967 |
| APT57165.1 | APT58768.1 | RGI145_08715 | RGI145_18295 | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. | 0.901 |
| APT57165.1 | argD | RGI145_08715 | RGI145_04755 | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acetylornithine transaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.912 |
| APT57165.1 | argG | RGI145_08715 | RGI145_01655 | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | Argininosuccinate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the argininosuccinate synthase family. Type 1 subfamily. | 0.927 |
| APT57165.1 | argJ | RGI145_08715 | RGI145_12485 | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | Bifunctional ornithine acetyltransferase/N-acetylglutamate synthase; Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis: the synthesis of N-acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate. Belongs to the ArgJ family. | 0.910 |
| APT57692.1 | APT56517.1 | RGI145_11835 | RGI145_04760 | Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Ornithine carbamoyltransferase; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline. | 0.923 |
| APT57692.1 | APT57165.1 | RGI145_11835 | RGI145_08715 | Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.967 |
| APT57692.1 | APT58768.1 | RGI145_11835 | RGI145_18295 | Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Arginase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the arginase family. | 0.901 |
| APT57692.1 | argB | RGI145_11835 | RGI145_07090 | Acetylornithine deacetylase; Derived by automated computational analysis using gene prediction method: Protein Homology. | Acetylglutamate kinase; Catalyzes the ATP-dependent phosphorylation of N-acetyl-L- glutamate; Belongs to the acetylglutamate kinase family. ArgB subfamily. | 0.579 |
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