STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT56671.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (196 aa)    
Predicted Functional Partners:
APT56674.1
DNA-binding response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.939
APT58194.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
  0.911
APT57626.1
Hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.755
APT57624.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
APT57622.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.703
APT57623.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.699
APT57628.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.692
APT57402.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.691
APT57620.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.648
APT57631.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.630
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.