Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dppD-2DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)    
Predicted Functional Partners:
APT57056.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.984
APT55865.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.949
APT60074.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.932
APT57398.1
NAD synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.928
APT58616.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.928
APT56154.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.924
APT58376.1
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.919
APT55965.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.918
APT57252.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.909
APT59442.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.898
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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