Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
APT57053.1Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily. (353 aa)    
Predicted Functional Partners:
APT57055.1
Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  0.985
APT57056.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.951
APT55865.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.891
dppD-2
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
0.850
APT57054.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.823
APT60074.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.805
APT57398.1
NAD synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.793
APT58853.1
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.778
APT56154.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   0.773
APT57051.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.773
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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