STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT57055.1Peptide ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (315 aa)    
Predicted Functional Partners:
APT57053.1
Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ABC transporter superfamily.
 
  0.983
APT57056.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.961
APT57054.1
ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.946
dppD-2
DppD and DppF are the ATP-binding components of the ABC dipeptide transport system DppABCDF; Derived by automated computational analysis using gene prediction method: Protein Homology.
   0.872
APT56370.1
D-ala-D-ala transporter subunit; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.848
APT58853.1
Glutathione ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.841
APT58376.1
Nickel ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.832
APT57398.1
NAD synthetase; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.829
APT56154.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.826
APT57252.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
    0.826
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
Server load: medium (42%) [HD]