Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
APT57060.1Amidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (256 aa)    
Predicted Functional Partners:
APT57613.1
DNA helicase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.620
APT57424.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.524
APT59156.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.522
APT57059.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.507
APT57834.1
Nitrile hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.500
APT57835.1
Nitrile hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.500
APT57836.1
Nitrile hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
  0.500
APT56689.1
Disulfide bond formation protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
APT58782.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.476
APT57555.1
Rod shape-determining protein MreD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.454
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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