STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT59241.1Squalene-hopene cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology. (635 aa)    
Predicted Functional Partners:
APT57340.1
Hopanoid-associated phosphorylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
 0.964
APT57341.1
Hopanoid biosynthesis associated radical SAM protein HpnH; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.927
APT59240.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.913
APT57338.1
Glycosyl transferase family 2; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.908
APT57337.1
NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.902
APT59239.1
Squalene synthase HpnD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.898
APT57339.1
Squalene synthase HpnC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.870
APT57343.1
Hopanoid biosynthesis-associated RND transporter HpnN; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.793
APT57348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.737
APT57342.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.571
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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