STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT57408.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (396 aa)    
Predicted Functional Partners:
APT57414.1
Cytidyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.807
APT57410.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
    0.782
APT57409.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
APT57411.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
APT57412.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.534
APT57407.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.477
APT56207.1
Heparinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.459
APT57413.1
Phosphoheptose isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
   0.421
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.