STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT58203.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (402 aa)    
Predicted Functional Partners:
APT59156.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.560
APT57003.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.560
APT57348.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.526
APT55814.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the UPF0337 (CsbD) family.
  
     0.462
APT58146.1
PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.461
APT56557.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.456
APT57343.1
Hopanoid biosynthesis-associated RND transporter HpnN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.445
APT57340.1
Hopanoid-associated phosphorylase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
     0.432
RGI145_05135
Fe-S cluster assembly protein HesB; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.420
APT58323.1
Malonate transporter subunit MadM; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.417
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.