STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT58346.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (513 aa)    
Predicted Functional Partners:
APT59405.1
L-rhamnose mutarotase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.988
APT59404.1
Short-chain dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.905
APT58345.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.888
APT58344.1
L-rhamnose catabolism isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.868
APT59630.1
Fucose-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the RbsD / FucU family.
 
  
 0.663
APT60005.1
D-tagatose 3-epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.521
APT58146.1
PTS fructose transporter subunit IIBC; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.473
APT60006.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.464
APT58148.1
Phosphoenolpyruvate--protein phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the PEP-utilizing enzyme family.
    
 
 0.460
APT60108.1
Sugar ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.433
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.