Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| APT56039.1 | APT58374.1 | RGI145_01825 | RGI145_15920 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | 0.473 |
| APT56039.1 | rpmB | RGI145_01825 | RGI145_12590 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family. | 0.663 |
| APT56039.1 | rpsN | RGI145_01825 | RGI145_13700 | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.420 |
| APT56613.1 | APT58374.1 | RGI145_05320 | RGI145_15920 | Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | 0.998 |
| APT56613.1 | APT59119.1 | RGI145_05320 | RGI145_05325 | Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.999 |
| APT56613.1 | mntH | RGI145_05320 | RGI145_13975 | Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | Divalent metal cation transporter; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | 0.736 |
| APT56865.1 | APT58374.1 | RGI145_06860 | RGI145_15920 | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | 0.480 |
| APT56865.1 | rpmB | RGI145_06860 | RGI145_12590 | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family. | 0.426 |
| APT56865.1 | rpsN | RGI145_06860 | RGI145_13700 | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.617 |
| APT58257.1 | APT58374.1 | RGI145_15200 | RGI145_15920 | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | 0.480 |
| APT58257.1 | rpmB | RGI145_15200 | RGI145_12590 | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | 50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family. | 0.426 |
| APT58257.1 | rpsN | RGI145_15200 | RGI145_13700 | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | 30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.617 |
| APT58374.1 | APT56039.1 | RGI145_15920 | RGI145_01825 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. | 0.473 |
| APT58374.1 | APT56613.1 | RGI145_15920 | RGI145_05320 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | Zinc ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.998 |
| APT58374.1 | APT56865.1 | RGI145_15920 | RGI145_06860 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.480 |
| APT58374.1 | APT58257.1 | RGI145_15920 | RGI145_15200 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | Cobalamin biosynthesis protein CobW; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.480 |
| APT58374.1 | APT58922.1 | RGI145_15920 | RGI145_19235 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.480 |
| APT58374.1 | APT59119.1 | RGI145_15920 | RGI145_05325 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | ABC transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.991 |
| APT58374.1 | APT59451.1 | RGI145_15920 | RGI145_17440 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | GTPase; Derived by automated computational analysis using gene prediction method: Protein Homology. | 0.480 |
| APT58374.1 | mntH | RGI145_15920 | RGI145_13975 | Metal ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial solute-binding protein 9 family. | Divalent metal cation transporter; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. | 0.500 |
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