APT58685.1 protein (Roseomonas gilardii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

APT58685.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (182 aa)

Predicted Functional Partners:

APT58686.1

0.998

APT59466.1

0.998

APT58681.1

0.997

APT58684.1

0.982

APT58679.1

0.970

APT58687.1

0.960

APT59465.1

0.946

APT59049.1

0.941

APT56257.1

0.940

APT58682.1

0.925

Your Current Organism:

Roseomonas gilardii

NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT56257.1	APT58679.1	RGI145_03160	RGI145_17750	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.943
APT56257.1	APT58681.1	RGI145_03160	RGI145_17760	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.996
APT56257.1	APT58685.1	RGI145_03160	RGI145_17785	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.940
APT56257.1	APT58687.1	RGI145_03160	RGI145_17800	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.667
APT56257.1	APT59049.1	RGI145_03160	RGI145_03155	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.999
APT58679.1	APT56257.1	RGI145_17750	RGI145_03160	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.943
APT58679.1	APT58681.1	RGI145_17750	RGI145_17760	Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APT58679.1	APT58682.1	RGI145_17750	RGI145_17765	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.963
APT58679.1	APT58684.1	RGI145_17750	RGI145_17780	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.889
APT58679.1	APT58685.1	RGI145_17750	RGI145_17785	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.970
APT58679.1	APT58686.1	RGI145_17750	RGI145_17790	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.911
APT58679.1	APT58687.1	RGI145_17750	RGI145_17800	Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.916
APT58679.1	APT59049.1	RGI145_17750	RGI145_03155	Derived by automated computational analysis using gene prediction method: Protein Homology.	Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.940
APT58679.1	APT59465.1	RGI145_17750	RGI145_17775	Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.953
APT58679.1	APT59466.1	RGI145_17750	RGI145_17795	Derived by automated computational analysis using gene prediction method: Protein Homology.	4Fe-4S ferredoxin; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APT58681.1	APT56257.1	RGI145_17760	RGI145_03160	Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome B; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.	0.996
APT58681.1	APT58679.1	RGI145_17760	RGI145_17750	Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APT58681.1	APT58682.1	RGI145_17760	RGI145_17765	Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.981
APT58681.1	APT58684.1	RGI145_17760	RGI145_17780	Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Derived by automated computational analysis using gene prediction method: Protein Homology.	0.923
APT58681.1	APT58685.1	RGI145_17760	RGI145_17785	Cytochrome c oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.997