APT59648.1 protein (Roseomonas gilardii) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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textmining

co-expression

protein homology

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[Homology]

Score

APT59648.1

Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (421 aa)

Predicted Functional Partners:

APT59649.1

0.998

APT56910.1

0.990

APT56360.1

0.981

APT59647.1

0.937

APT56361.1

0.922

APT60059.1

0.855

APT60060.1

0.798

APT59642.1

0.784

APT59643.1

0.784

APT59644.1

0.755

Your Current Organism:

Roseomonas gilardii

NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APT56360.1	APT56361.1	RGI145_03830	RGI145_03835	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APT56360.1	APT56910.1	RGI145_03830	RGI145_07155	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APT56360.1	APT59648.1	RGI145_03830	RGI145_20150	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.981
APT56360.1	APT59649.1	RGI145_03830	RGI145_20155	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.916
APT56361.1	APT56360.1	RGI145_03835	RGI145_03830	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.999
APT56361.1	APT56910.1	RGI145_03835	RGI145_07155	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APT56361.1	APT59648.1	RGI145_03835	RGI145_20150	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.922
APT56361.1	APT59649.1	RGI145_03835	RGI145_20155	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.978
APT56910.1	APT56360.1	RGI145_07155	RGI145_03830	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptG; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.991
APT56910.1	APT56361.1	RGI145_07155	RGI145_03835	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	LPS export ABC transporter permease LptF; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.993
APT56910.1	APT59648.1	RGI145_07155	RGI145_20150	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.990
APT56910.1	APT59649.1	RGI145_07155	RGI145_20155	LPS export ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.989
APT59642.1	APT59643.1	RGI145_20120	RGI145_20125	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961
APT59642.1	APT59644.1	RGI145_20120	RGI145_20130	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Phosphatidylglycerophosphate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.	0.957
APT59642.1	APT59647.1	RGI145_20120	RGI145_20145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
APT59642.1	APT59648.1	RGI145_20120	RGI145_20150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.784
APT59642.1	APT59649.1	RGI145_20120	RGI145_20155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.715
APT59642.1	APT60059.1	RGI145_20120	RGI145_20170	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.814
APT59642.1	APT60060.1	RGI145_20120	RGI145_20165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	dATP pyrophosphohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.786
APT59643.1	APT59642.1	RGI145_20125	RGI145_20120	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.961