STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APT59895.1Tat pathway signal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (392 aa)    
Predicted Functional Partners:
APT59896.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.948
APT59897.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.874
APT59894.1
Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.842
APT56532.1
Polyamine ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.824
APT56533.1
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.822
RGI145_15425
Alcohol dehydrogenase; Internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.813
potA-3
ABC transporter; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 0.691
potA
Fe3+/spermidine/putrescine ABC transporter ATP-binding protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 0.642
APT59394.1
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.610
APT57981.1
Polyamine ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.549
Your Current Organism:
Roseomonas gilardii
NCBI taxonomy Id: 257708
Other names: ATCC 49956, CCUG 33005, CIP 104026, R. gilardii, strain 5424
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