Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B0177_03810 | B0177_06740 | GCA_001074155_01418 | GCA_001074155_01086 | Unannotated protein. | Unannotated protein; Belongs to the UPF0297 family. | 0.413 |
B0177_03810 | polA | GCA_001074155_01418 | GCA_001074155_01604 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.461 |
B0177_03810 | polC | GCA_001074155_01418 | GCA_001074155_00450 | Unannotated protein. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.625 |
B0177_03810 | tmcAL | GCA_001074155_01418 | GCA_001074155_01415 | Unannotated protein. | Unannotated protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34. | 0.752 |
B0177_03810 | topA | GCA_001074155_01418 | GCA_001074155_00961 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.515 |
B0177_03810 | whiA | GCA_001074155_01418 | GCA_001074155_00115 | Unannotated protein. | Unannotated protein; Involved in cell division and chromosome segregation. | 0.422 |
B0177_06740 | B0177_03810 | GCA_001074155_01086 | GCA_001074155_01418 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein. | 0.413 |
B0177_06740 | mrnC | GCA_001074155_01086 | GCA_001074155_01368 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein; Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc); Rnc processes 30S rRNA into smaller rRNA precursors; Belongs to the MrnC RNase family. | 0.602 |
B0177_06740 | polC | GCA_001074155_01086 | GCA_001074155_00450 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.621 |
B0177_06740 | whiA | GCA_001074155_01086 | GCA_001074155_00115 | Unannotated protein; Belongs to the UPF0297 family. | Unannotated protein; Involved in cell division and chromosome segregation. | 0.657 |
GCA_001074155_00451 | GCA_001074155_00452 | GCA_001074155_00451 | GCA_001074155_00452 | Unannotated protein. | Unannotated protein. | 0.740 |
GCA_001074155_00451 | fusA | GCA_001074155_00451 | GCA_001074155_00449 | Unannotated protein. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.495 |
GCA_001074155_00451 | polA | GCA_001074155_00451 | GCA_001074155_01604 | Unannotated protein. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.461 |
GCA_001074155_00451 | polC | GCA_001074155_00451 | GCA_001074155_00450 | Unannotated protein. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.622 |
GCA_001074155_00451 | topA | GCA_001074155_00451 | GCA_001074155_00961 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.420 |
GCA_001074155_00452 | GCA_001074155_00451 | GCA_001074155_00452 | GCA_001074155_00451 | Unannotated protein. | Unannotated protein. | 0.740 |
GCA_001074155_00452 | fusA | GCA_001074155_00452 | GCA_001074155_00449 | Unannotated protein. | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | 0.401 |
GCA_001074155_00452 | polC | GCA_001074155_00452 | GCA_001074155_00450 | Unannotated protein. | Unannotated protein; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.560 |
fusA | GCA_001074155_00451 | GCA_001074155_00449 | GCA_001074155_00451 | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Unannotated protein. | 0.495 |
fusA | GCA_001074155_00452 | GCA_001074155_00449 | GCA_001074155_00452 | Unannotated protein; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 subfamily. | Unannotated protein. | 0.401 |
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