Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B0177_00300 | B0177_07085 | GCA_001074155_01123 | GCA_001074155_01124 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.526 |
B0177_00300 | B0177_07090 | GCA_001074155_01123 | GCA_001074155_01125 | Unannotated protein. | Unannotated protein; Belongs to the CDS family. | 0.526 |
B0177_00300 | B0177_07095 | GCA_001074155_01123 | GCA_001074155_01126 | Unannotated protein. | Unannotated protein. | 0.488 |
B0177_00300 | proS | GCA_001074155_01123 | GCA_001074155_01127 | Unannotated protein. | Unannotated protein; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacyl [...] | 0.467 |
B0177_02010 | B0177_07085 | GCA_001074155_00152 | GCA_001074155_01124 | Unannotated protein. | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | 0.497 |
B0177_02010 | B0177_07090 | GCA_001074155_00152 | GCA_001074155_01125 | Unannotated protein. | Unannotated protein; Belongs to the CDS family. | 0.496 |
B0177_02010 | cinA | GCA_001074155_00152 | GCA_001074155_01096 | Unannotated protein. | Unannotated protein; Belongs to the CinA family. | 0.595 |
B0177_02010 | topA | GCA_001074155_00152 | GCA_001074155_00961 | Unannotated protein. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.499 |
B0177_02010 | tpiA | GCA_001074155_00152 | GCA_001074155_00104 | Unannotated protein. | Unannotated protein; Involved in the gluconeogenesis. Catalyzes stereospecifically the conversion of dihydroxyacetone phosphate (DHAP) to D- glyceraldehyde-3-phosphate (G3P); Belongs to the triosephosphate isomerase family. | 0.435 |
B0177_02010 | truA | GCA_001074155_00152 | GCA_001074155_01435 | Unannotated protein. | Unannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.622 |
B0177_07085 | B0177_00300 | GCA_001074155_01124 | GCA_001074155_01123 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein. | 0.526 |
B0177_07085 | B0177_02010 | GCA_001074155_01124 | GCA_001074155_00152 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein. | 0.497 |
B0177_07085 | B0177_07090 | GCA_001074155_01124 | GCA_001074155_01125 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein; Belongs to the CDS family. | 0.965 |
B0177_07085 | B0177_07095 | GCA_001074155_01124 | GCA_001074155_01126 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein. | 0.910 |
B0177_07085 | B0177_07105 | GCA_001074155_01124 | GCA_001074155_01128 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein; Belongs to the glycosyl hydrolase 1 family. | 0.485 |
B0177_07085 | cinA | GCA_001074155_01124 | GCA_001074155_01096 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein; Belongs to the CinA family. | 0.485 |
B0177_07085 | proS | GCA_001074155_01124 | GCA_001074155_01127 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves deacyl [...] | 0.886 |
B0177_07085 | topA | GCA_001074155_01124 | GCA_001074155_00961 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.576 |
B0177_07085 | truA | GCA_001074155_01124 | GCA_001074155_01435 | Unannotated protein; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids. | Unannotated protein; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. | 0.537 |
B0177_07090 | B0177_00300 | GCA_001074155_01125 | GCA_001074155_01123 | Unannotated protein; Belongs to the CDS family. | Unannotated protein. | 0.526 |
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