Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B0177_02010 | B0177_09660 | GCA_001074155_00152 | GCA_001074155_00419 | Unannotated protein. | Unannotated protein. | 0.590 |
B0177_02010 | B0177_10165 | GCA_001074155_00152 | GCA_001074155_01293 | Unannotated protein. | Unannotated protein. | 0.430 |
B0177_02010 | GCA_001074155_01164 | GCA_001074155_00152 | GCA_001074155_01164 | Unannotated protein. | Unannotated protein. | 0.728 |
B0177_02010 | ilvA | GCA_001074155_00152 | GCA_001074155_01294 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.651 |
B0177_02010 | ilvB | GCA_001074155_00152 | GCA_001074155_01297 | Unannotated protein. | Unannotated protein. | 0.809 |
B0177_02010 | ilvC | GCA_001074155_00152 | GCA_001074155_01295 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.664 |
B0177_02010 | ilvD | GCA_001074155_00152 | GCA_001074155_00430 | Unannotated protein. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.852 |
B0177_02010 | ilvN | GCA_001074155_00152 | GCA_001074155_01296 | Unannotated protein. | Unannotated protein. | 0.739 |
B0177_02010 | leuC | GCA_001074155_00152 | GCA_001074155_00954 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.703 |
B0177_03360 | ilvA | GCA_001074155_00112 | GCA_001074155_01294 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.588 |
B0177_09660 | B0177_02010 | GCA_001074155_00419 | GCA_001074155_00152 | Unannotated protein. | Unannotated protein. | 0.590 |
B0177_09660 | ilvA | GCA_001074155_00419 | GCA_001074155_01294 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.580 |
B0177_09660 | ilvB | GCA_001074155_00419 | GCA_001074155_01297 | Unannotated protein. | Unannotated protein. | 0.477 |
B0177_09660 | ilvC | GCA_001074155_00419 | GCA_001074155_01295 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.652 |
B0177_09660 | ilvD | GCA_001074155_00419 | GCA_001074155_00430 | Unannotated protein. | Unannotated protein; Belongs to the IlvD/Edd family. | 0.494 |
B0177_09660 | ilvN | GCA_001074155_00419 | GCA_001074155_01296 | Unannotated protein. | Unannotated protein. | 0.611 |
B0177_09660 | leuC | GCA_001074155_00419 | GCA_001074155_00954 | Unannotated protein. | Unannotated protein; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.500 |
B0177_10165 | B0177_02010 | GCA_001074155_01293 | GCA_001074155_00152 | Unannotated protein. | Unannotated protein. | 0.430 |
B0177_10165 | ilvA | GCA_001074155_01293 | GCA_001074155_01294 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.714 |
B0177_10165 | ilvB | GCA_001074155_01293 | GCA_001074155_01297 | Unannotated protein. | Unannotated protein. | 0.486 |
page 1 of 4