Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B0177_01765 | GCA_001074155_01534 | GCA_001074155_01532 | GCA_001074155_01534 | Unannotated protein. | Unannotated protein. | 0.919 |
B0177_01765 | rpsE | GCA_001074155_01532 | GCA_001074155_01547 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.491 |
B0177_01765 | yidC | GCA_001074155_01532 | GCA_001074155_01533 | Unannotated protein. | Unannotated protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.911 |
GCA_001074155_00676 | rplL | GCA_001074155_00676 | GCA_001074155_00333 | Unannotated protein. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.498 |
GCA_001074155_00676 | rplQ | GCA_001074155_00676 | GCA_001074155_01537 | Unannotated protein. | Unannotated protein. | 0.468 |
GCA_001074155_00676 | rpsE | GCA_001074155_00676 | GCA_001074155_01547 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.678 |
GCA_001074155_00676 | secY | GCA_001074155_00676 | GCA_001074155_01544 | Unannotated protein. | Unannotated protein; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.666 |
GCA_001074155_00676 | yidC | GCA_001074155_00676 | GCA_001074155_01533 | Unannotated protein. | Unannotated protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.842 |
GCA_001074155_01534 | B0177_01765 | GCA_001074155_01534 | GCA_001074155_01532 | Unannotated protein. | Unannotated protein. | 0.919 |
GCA_001074155_01534 | prfB | GCA_001074155_01534 | GCA_001074155_01385 | Unannotated protein. | Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | 0.458 |
GCA_001074155_01534 | rplQ | GCA_001074155_01534 | GCA_001074155_01537 | Unannotated protein. | Unannotated protein. | 0.571 |
GCA_001074155_01534 | rpsE | GCA_001074155_01534 | GCA_001074155_01547 | Unannotated protein. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.465 |
GCA_001074155_01534 | secG | GCA_001074155_01534 | GCA_001074155_00348 | Unannotated protein. | Unannotated protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family. | 0.456 |
GCA_001074155_01534 | yidC | GCA_001074155_01534 | GCA_001074155_01533 | Unannotated protein. | Unannotated protein; Required for the insertion and/or proper folding and/or complex formation of integral membrane proteins into the membrane. Involved in integration of membrane proteins that insert both dependently and independently of the Sec translocase complex, as well as at least some lipoproteins; Belongs to the OXA1/ALB3/YidC family. Type 2 subfamily. | 0.932 |
prfB | GCA_001074155_01534 | GCA_001074155_01385 | GCA_001074155_01534 | Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Unannotated protein. | 0.458 |
prfB | rplL | GCA_001074155_01385 | GCA_001074155_00333 | Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Unannotated protein; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. | 0.909 |
prfB | rplQ | GCA_001074155_01385 | GCA_001074155_01537 | Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Unannotated protein. | 0.921 |
prfB | rplS | GCA_001074155_01385 | GCA_001074155_00987 | Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.880 |
prfB | rpsE | GCA_001074155_01385 | GCA_001074155_01547 | Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Unannotated protein; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.872 |
prfB | secY | GCA_001074155_01385 | GCA_001074155_01544 | Unannotated protein; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA. | Unannotated protein; The central subunit of the protein translocation channel SecYEG. Consists of two halves formed by TMs 1-5 and 6-10. These two domains form a lateral gate at the front which open onto the bilayer between TMs 2 and 7, and are clamped together by SecE at the back. The channel is closed by both a pore ring composed of hydrophobic SecY resides and a short helix (helix 2A) on the extracellular side of the membrane which forms a plug. The plug probably moves laterally to allow the channel to open. The ring and the pore may move independently. | 0.473 |
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