STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000717275_00052Unannotated protein. (154 aa)    
Predicted Functional Partners:
GCA_000717275_02048
Unannotated protein.
    
 0.745
GCA_000717275_01329
Unannotated protein.
   
 
 0.690
GCA_000717275_04033
Unannotated protein.
   
 
 0.690
GCA_000717275_00053
Unannotated protein.
 
     0.538
GCA_000717275_00051
Unannotated protein.
       0.505
GCA_000717275_00957
Unannotated protein.
  
 
 0.487
GCA_000717275_02068
Unannotated protein.
  
 
 0.487
GCA_000717275_04841
Unannotated protein.
  
 
 0.487
GCA_000717275_00649
Unannotated protein.
   
    0.471
GCA_000717275_02253
Unannotated protein.
  
     0.458
Your Current Organism:
Kitasatospora arboriphila
NCBI taxonomy Id: 258052
Other names: DSM 44785, HKI 0189, JCM 13002, K. arboriphila, Kitasatospora arboriphila Groth et al. 2004, Kitasatospora arborophila, NBRC 101834, NCIMB 13973, strain 2291-120
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.