STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM93609.1Menaquinone-dependent protoporphyrinogen oxidase. (166 aa)    
Predicted Functional Partners:
SDN29322.1
Oxygen-independent coproporphyrinogen-3 oxidase.
    
 0.839
SDN54962.1
Oxygen-independent coproporphyrinogen-3 oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
    
 0.839
SDM60258.1
DNA-binding transcriptional regulator, MarR family.
 
     0.691
SDM61139.1
DNA-binding transcriptional regulator, MarR family.
 
     0.638
SDM52505.1
Uncharacterized protein, contains FMN-binding domain.
 
     0.606
SDM89778.1
FMN-binding domain-containing protein.
 
     0.535
SDM93544.1
tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA.
       0.493
SDM80818.1
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
     0.473
SDM95646.1
Fluoroquinolone transport system ATP-binding protein.
  
     0.467
SDM60290.1
Hypothetical protein.
 
     0.462
Your Current Organism:
Acetanaerobacterium elongatum
NCBI taxonomy Id: 258515
Other names: A. elongatum, AS 1.5012, Acetanaerobacterium elongatum Chen and Dong 2004, JCM 12359, strain Z7
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