STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM95494.1GHKL domain-containing protein. (427 aa)    
Predicted Functional Partners:
SDN93847.1
PAS domain S-box-containing protein/diguanylate cyclase (GGDEF) domain-containing protein.
  
 0.929
SDM95448.1
Two component transcriptional regulator, LytTR family.
 
  
 0.891
SDN93891.1
Diguanylate cyclase (GGDEF) domain-containing protein.
  
 
 0.874
SDN89639.1
Diguanylate cyclase/phosphodiesterase.
  
 
 0.845
SDN00186.1
Ammonium transporter, Amt family; Belongs to the P(II) protein family.
   
 0.824
SDM78270.1
HD domain-containing protein.
  
 0.815
SDN19939.1
Flagellar motor switch protein FliN/FliY.
   
 0.796
SDN13424.1
Pyruvate kinase; Belongs to the pyruvate kinase family.
   
  0.793
SDN33868.1
Two component transcriptional regulator, LytTR family.
  
  
 0.779
SDM55675.1
Putative ABC transport system permease protein.
 
 0.774
Your Current Organism:
Acetanaerobacterium elongatum
NCBI taxonomy Id: 258515
Other names: A. elongatum, AS 1.5012, Acetanaerobacterium elongatum Chen and Dong 2004, JCM 12359, strain Z7
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