STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN29120.1Protoporphyrinogen IX oxidase, menaquinone-dependent (flavodoxin domain). (175 aa)    
Predicted Functional Partners:
SDN29157.1
Exonuclease RecJ.
       0.488
SDN29322.1
Oxygen-independent coproporphyrinogen-3 oxidase.
    
 0.447
SDM71469.1
Manganese containing catalase.
  
     0.416
SDM66168.1
Von Willebrand factor type A domain-containing protein.
  
  
  0.412
SDN43723.1
Hypothetical protein.
  
     0.407
Your Current Organism:
Acetanaerobacterium elongatum
NCBI taxonomy Id: 258515
Other names: A. elongatum, AS 1.5012, Acetanaerobacterium elongatum Chen and Dong 2004, JCM 12359, strain Z7
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