STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN27555.1Sporulation protein YqfC. (78 aa)    
Predicted Functional Partners:
SDN27609.1
Similar to stage IV sporulation protein.
  
  
 0.969
SDN27508.1
Sporulation integral membrane protein YlbJ.
     
 0.654
SDN23886.1
Phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase/phosphoribosylaminoimidazolecarboxamide formyltransferase.
   
    0.601
SDN27651.1
Phosphate starvation-inducible protein PhoH.
       0.581
ybeY
Probable rRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.514
SDN27743.1
Diacylglycerol kinase (ATP).
       0.514
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.514
SDN36108.1
Stage III sporulation protein AB.
   
  
 0.456
SDN36069.1
Stage III sporulation protein AC.
   
  
 0.451
recO
DNA replication and repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.445
Your Current Organism:
Acetanaerobacterium elongatum
NCBI taxonomy Id: 258515
Other names: A. elongatum, AS 1.5012, Acetanaerobacterium elongatum Chen and Dong 2004, JCM 12359, strain Z7
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