Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM89565.1 | SDN42607.1 | SAMN05192585_10735 | SAMN05192585_11910 | Hypothetical protein. | Hypothetical protein. | 0.492 |
SDN19388.1 | SDN42607.1 | SAMN05192585_11329 | SAMN05192585_11910 | Flagellar biosynthesis protein. | Hypothetical protein. | 0.654 |
SDN19388.1 | rnhB | SAMN05192585_11329 | SAMN05192585_1196 | Flagellar biosynthesis protein. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.572 |
SDN42410.1 | SDN42485.1 | SAMN05192585_1195 | SAMN05192585_1197 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Putative endonuclease; Belongs to the UPF0102 family. | 0.837 |
SDN42410.1 | SDN42523.1 | SAMN05192585_1195 | SAMN05192585_1198 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Membrane dipeptidase. | 0.730 |
SDN42410.1 | SDN42564.1 | SAMN05192585_1195 | SAMN05192585_1199 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Threonine synthase. | 0.645 |
SDN42410.1 | SDN42607.1 | SAMN05192585_1195 | SAMN05192585_11910 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Hypothetical protein. | 0.588 |
SDN42410.1 | rnhB | SAMN05192585_1195 | SAMN05192585_1196 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.911 |
SDN42410.1 | tig | SAMN05192585_1195 | SAMN05192585_11911 | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.608 |
SDN42485.1 | SDN42410.1 | SAMN05192585_1197 | SAMN05192585_1195 | Putative endonuclease; Belongs to the UPF0102 family. | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.837 |
SDN42485.1 | SDN42523.1 | SAMN05192585_1197 | SAMN05192585_1198 | Putative endonuclease; Belongs to the UPF0102 family. | Membrane dipeptidase. | 0.730 |
SDN42485.1 | SDN42564.1 | SAMN05192585_1197 | SAMN05192585_1199 | Putative endonuclease; Belongs to the UPF0102 family. | Threonine synthase. | 0.645 |
SDN42485.1 | SDN42607.1 | SAMN05192585_1197 | SAMN05192585_11910 | Putative endonuclease; Belongs to the UPF0102 family. | Hypothetical protein. | 0.588 |
SDN42485.1 | rnhB | SAMN05192585_1197 | SAMN05192585_1196 | Putative endonuclease; Belongs to the UPF0102 family. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.974 |
SDN42485.1 | tig | SAMN05192585_1197 | SAMN05192585_11911 | Putative endonuclease; Belongs to the UPF0102 family. | Trigger factor; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.471 |
SDN42523.1 | SDN42410.1 | SAMN05192585_1198 | SAMN05192585_1195 | Membrane dipeptidase. | Ribosome biogenesis GTPase A; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily. | 0.730 |
SDN42523.1 | SDN42485.1 | SAMN05192585_1198 | SAMN05192585_1197 | Membrane dipeptidase. | Putative endonuclease; Belongs to the UPF0102 family. | 0.730 |
SDN42523.1 | SDN42564.1 | SAMN05192585_1198 | SAMN05192585_1199 | Membrane dipeptidase. | Threonine synthase. | 0.724 |
SDN42523.1 | SDN42607.1 | SAMN05192585_1198 | SAMN05192585_11910 | Membrane dipeptidase. | Hypothetical protein. | 0.639 |
SDN42523.1 | rnhB | SAMN05192585_1198 | SAMN05192585_1196 | Membrane dipeptidase. | RNase HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.730 |
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