Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDM53033.1 | SDN68338.1 | SAMN05192585_10129 | SAMN05192585_12810 | Hypothetical protein. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.412 |
SDM53033.1 | SDN68376.1 | SAMN05192585_10129 | SAMN05192585_12811 | Hypothetical protein. | YidC/Oxa1 family membrane protein insertase. | 0.510 |
SDM53033.1 | ispH | SAMN05192585_10129 | SAMN05192585_11611 | Hypothetical protein. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.581 |
SDM53033.1 | rnpA | SAMN05192585_10129 | SAMN05192585_1289 | Hypothetical protein. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.837 |
SDM53033.1 | rplC | SAMN05192585_10129 | SAMN05192585_10872 | Hypothetical protein. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.961 |
SDM53033.1 | rplD | SAMN05192585_10129 | SAMN05192585_10873 | Hypothetical protein. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.965 |
SDM53033.1 | rpsT | SAMN05192585_10129 | SAMN05192585_15515 | Hypothetical protein. | Small subunit ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.986 |
SDN68338.1 | SDM53033.1 | SAMN05192585_12810 | SAMN05192585_10129 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Hypothetical protein. | 0.412 |
SDN68338.1 | SDN68376.1 | SAMN05192585_12810 | SAMN05192585_12811 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | YidC/Oxa1 family membrane protein insertase. | 0.952 |
SDN68338.1 | SDN68416.1 | SAMN05192585_12810 | SAMN05192585_12812 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | spoIIIJ-associated protein. | 0.811 |
SDN68338.1 | rnpA | SAMN05192585_12810 | SAMN05192585_1289 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.980 |
SDN68338.1 | rplD | SAMN05192585_12810 | SAMN05192585_10873 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | LSU ribosomal protein L4P; Forms part of the polypeptide exit tunnel. | 0.628 |
SDN68338.1 | rpmH | SAMN05192585_12810 | SAMN05192585_1288 | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | LSU ribosomal protein L34P; Belongs to the bacterial ribosomal protein bL34 family. | 0.691 |
SDN68376.1 | SDM53033.1 | SAMN05192585_12811 | SAMN05192585_10129 | YidC/Oxa1 family membrane protein insertase. | Hypothetical protein. | 0.510 |
SDN68376.1 | SDN68338.1 | SAMN05192585_12811 | SAMN05192585_12810 | YidC/Oxa1 family membrane protein insertase. | Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family. | 0.952 |
SDN68376.1 | SDN68416.1 | SAMN05192585_12811 | SAMN05192585_12812 | YidC/Oxa1 family membrane protein insertase. | spoIIIJ-associated protein. | 0.922 |
SDN68376.1 | dnaA | SAMN05192585_12811 | SAMN05192585_1287 | YidC/Oxa1 family membrane protein insertase. | Chromosomal replication initiator protein; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. | 0.449 |
SDN68376.1 | ispH | SAMN05192585_12811 | SAMN05192585_11611 | YidC/Oxa1 family membrane protein insertase. | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.612 |
SDN68376.1 | rnpA | SAMN05192585_12811 | SAMN05192585_1289 | YidC/Oxa1 family membrane protein insertase. | Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. | 0.946 |
SDN68376.1 | rplC | SAMN05192585_12811 | SAMN05192585_10872 | YidC/Oxa1 family membrane protein insertase. | Large subunit ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. | 0.714 |
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