Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDN13424.1 | SDN25785.1 | SAMN05192585_1123 | SAMN05192585_11468 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.971 |
SDN13424.1 | SDN81007.1 | SAMN05192585_1123 | SAMN05192585_13310 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Transaldolase. | 0.906 |
SDN13424.1 | SDN81047.1 | SAMN05192585_1123 | SAMN05192585_13311 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Transaldolase. | 0.906 |
SDN13424.1 | SDN81115.1 | SAMN05192585_1123 | SAMN05192585_13313 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Transketolase. | 0.838 |
SDN13424.1 | SDN81153.1 | SAMN05192585_1123 | SAMN05192585_13314 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Transketolase. | 0.836 |
SDN13424.1 | deoC | SAMN05192585_1123 | SAMN05192585_10848 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.871 |
SDN13424.1 | pfkA | SAMN05192585_1123 | SAMN05192585_11735 | Pyruvate kinase; Belongs to the pyruvate kinase family. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.999 |
SDN13424.1 | pfp | SAMN05192585_1123 | SAMN05192585_11658 | Pyruvate kinase; Belongs to the pyruvate kinase family. | 6-phosphofructokinase 1; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions. | 0.999 |
SDN13424.1 | rnfB | SAMN05192585_1123 | SAMN05192585_10829 | Pyruvate kinase; Belongs to the pyruvate kinase family. | Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.902 |
SDN25785.1 | SDN13424.1 | SAMN05192585_11468 | SAMN05192585_1123 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.971 |
SDN25785.1 | SDN81007.1 | SAMN05192585_11468 | SAMN05192585_13310 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Transaldolase. | 0.911 |
SDN25785.1 | SDN81047.1 | SAMN05192585_11468 | SAMN05192585_13311 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Transaldolase. | 0.911 |
SDN25785.1 | SDN81115.1 | SAMN05192585_11468 | SAMN05192585_13313 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Transketolase. | 0.852 |
SDN25785.1 | SDN81153.1 | SAMN05192585_11468 | SAMN05192585_13314 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Transketolase. | 0.853 |
SDN25785.1 | deoC | SAMN05192585_11468 | SAMN05192585_10848 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. | 0.878 |
SDN25785.1 | pfkA | SAMN05192585_11468 | SAMN05192585_11735 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | 0.774 |
SDN25785.1 | pfp | SAMN05192585_11468 | SAMN05192585_11658 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 6-phosphofructokinase 1; Catalyzes the phosphorylation of D-fructose 6-phosphate, the first committing step of glycolysis. Uses inorganic phosphate (PPi) as phosphoryl donor instead of ATP like common ATP-dependent phosphofructokinases (ATP-PFKs), which renders the reaction reversible, and can thus function both in glycolysis and gluconeogenesis. Consistently, PPi-PFK can replace the enzymes of both the forward (ATP- PFK) and reverse (fructose-bisphosphatase (FBPase)) reactions. | 0.774 |
SDN25785.1 | rnfB | SAMN05192585_11468 | SAMN05192585_10829 | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | Electron transport complex, RnfABCDGE type, B subunit; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane. Belongs to the 4Fe4S bacterial-type ferredoxin family. RnfB subfamily. | 0.998 |
SDN81007.1 | SDN13424.1 | SAMN05192585_13310 | SAMN05192585_1123 | Transaldolase. | Pyruvate kinase; Belongs to the pyruvate kinase family. | 0.906 |
SDN81007.1 | SDN25785.1 | SAMN05192585_13310 | SAMN05192585_11468 | Transaldolase. | Pyruvate-ferredoxin/flavodoxin oxidoreductase. | 0.911 |
page 1 of 5