STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN84428.1Stage V sporulation protein B. (508 aa)    
Predicted Functional Partners:
SDN99787.1
RNA polymerase, sigma 30 subunit, SigH; Belongs to the sigma-70 factor family.
  
    0.589
SDN29648.1
Sporulation protein YabP.
 
   
 0.508
SDO12136.1
Transcriptional pleiotropic regulator of transition state genes.
  
     0.499
SDM86329.1
AbrB family transcriptional regulator, stage V sporulation protein T.
 
   
 0.466
SDN84383.1
N-acetylglutamate synthase, GNAT family.
 
     0.465
SDO02629.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.407
SDN37604.1
Hypothetical protein.
  
     0.402
SDN43895.1
N-acetylmuramoyl-L-alanine amidase.
  
   
 0.402
Your Current Organism:
Acetanaerobacterium elongatum
NCBI taxonomy Id: 258515
Other names: A. elongatum, AS 1.5012, Acetanaerobacterium elongatum Chen and Dong 2004, JCM 12359, strain Z7
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.