STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO01351.1Protein of unknown function. (236 aa)    
Predicted Functional Partners:
SDO01319.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.913
SDO01380.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.897
SDM55675.1
Putative ABC transport system permease protein.
   
 
 0.874
SDM72743.1
MacB-like core domain-containing protein.
   
 
 0.759
SDN43763.1
Putative ABC transport system permease protein.
   
 
 0.759
SDO05626.1
RNA polymerase sigma-70 factor, ECF subfamily.
 
    0.660
SDO01286.1
Peptidase_C39 like family protein.
       0.623
SDM55641.1
Putative ABC transport system ATP-binding protein.
   
 
 0.580
SDM67458.1
Putative ABC transport system ATP-binding protein.
   
 
 0.580
SDM72843.1
ABC-type lipoprotein export system, ATPase component.
   
 
 0.580
Your Current Organism:
Acetanaerobacterium elongatum
NCBI taxonomy Id: 258515
Other names: A. elongatum, AS 1.5012, Acetanaerobacterium elongatum Chen and Dong 2004, JCM 12359, strain Z7
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