STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO05558.1REP13E12 repeat protein. (465 aa)    
Predicted Functional Partners:
CDO09863.1
Hypothetical alanine and proline rich protein.
  
 0.954
CDO07987.1
Hypothetical protein.
  
 0.942
CDO06516.1
13E12 repeat-containing protein.
  
    0.764
CDO10200.1
13e12 repeat-containing protein.
  
    0.760
CDO10815.1
HNH endonuclease.
  
    0.746
CDO07919.1
HNH endonuclease.
  
     0.739
CDO10703.1
Efflux ABC transporter permease.
  
 
 0.738
CDO10704.1
Efflux ABC transporter permease.
  
 
 0.738
CDO11172.1
HNH endonuclease.
  
     0.733
CDO09207.1
HNH endonuclease domain-containing protein.
  
    0.731
Your Current Organism:
Mycolicibacterium cosmeticum
NCBI taxonomy Id: 258533
Other names: ATCC BAA-878, CIP 108170, DSM 44829, JCM 14739, M. cosmeticum, Mycobacterium cosmeticum, Mycobacterium cosmeticum Cooksey et al. 2004, Mycobacterium oesypum, Mycolicibacterium cosmeticum (Cooksey et al. 2004) Gupta et al. 2018, strain LTA-388
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