STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO06026.1AraC family transcriptional regulator. (325 aa)    
Predicted Functional Partners:
CDO06414.1
Ferredoxin-dependent glutamate synthase 1.
    
  0.667
CDO07887.1
Glutamate synthase (NADH) large subunit.
    
  0.667
CDO06027.1
Hypothetical protein.
 
     0.645
CDO05934.1
Pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein.
     
 0.638
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.615
ribBA
GTP cyclohydrolase II/3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
 0.613
CDO09255.1
Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain protein.
  
    0.581
CDO09153.1
Chromosome replication initiation inhibitor protein; Belongs to the LysR transcriptional regulatory family.
  
    0.577
CDO06949.1
TetR family transcriptional regulator.
  
    0.534
CDO05316.1
Family 3 adenylate cyclase.
   
 
  0.515
Your Current Organism:
Mycolicibacterium cosmeticum
NCBI taxonomy Id: 258533
Other names: ATCC BAA-878, CIP 108170, DSM 44829, JCM 14739, M. cosmeticum, Mycobacterium cosmeticum, Mycobacterium cosmeticum Cooksey et al. 2004, Mycobacterium oesypum, Mycolicibacterium cosmeticum (Cooksey et al. 2004) Gupta et al. 2018, strain LTA-388
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