STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO06900.1Site-specific recombinase, DNA invertase Pin. (207 aa)    
Predicted Functional Partners:
CDO06899.1
Hypothetical protein.
       0.773
CDO06898.1
Divergent AAA domain protein.
       0.712
CDO11510.1
TraA/ATP-dependent exoDNAse/relaxase.
 
   
 0.500
CDO06901.1
YfbU family protein.
       0.479
CDO05296.1
Cytochrome C biogenesis protein transmembrane region.
   
    0.469
CDO09530.1
Cytochrome c biogenesis protein.
   
    0.469
CDO10351.1
Hypothetical protein.
   
    0.429
CDO06903.1
Hypothetical protein.
     
 0.400
Your Current Organism:
Mycolicibacterium cosmeticum
NCBI taxonomy Id: 258533
Other names: ATCC BAA-878, CIP 108170, DSM 44829, JCM 14739, M. cosmeticum, Mycobacterium cosmeticum, Mycobacterium cosmeticum Cooksey et al. 2004, Mycobacterium oesypum, Mycolicibacterium cosmeticum (Cooksey et al. 2004) Gupta et al. 2018, strain LTA-388
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.