STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO08027.1Wyosine base formation. (258 aa)    
Predicted Functional Partners:
CDO08028.1
Major facilitator superfamily transporter.
       0.803
CDO07043.1
Hypothetical protein.
 
     0.667
CDO08690.1
Hypothetical protein.
 
     0.604
CDO07201.1
Major facilitator superfamily transporter.
  
     0.560
CDO08029.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
       0.540
CDO11121.1
Polyketide cyclase/dehydrase and lipid transport.
  
     0.510
choD
Cholesterol oxidase ChoD.
    
  0.507
CDO07443.1
Glucose-methanol-choline oxidoreductase.
    
  0.507
CDO11128.1
Glucose-methanol-choline oxidoreductase.
    
  0.507
fadE12
acyl-CoA dehydrogenase.
 
     0.467
Your Current Organism:
Mycolicibacterium cosmeticum
NCBI taxonomy Id: 258533
Other names: ATCC BAA-878, CIP 108170, DSM 44829, JCM 14739, M. cosmeticum, Mycobacterium cosmeticum, Mycobacterium cosmeticum Cooksey et al. 2004, Mycobacterium oesypum, Mycolicibacterium cosmeticum (Cooksey et al. 2004) Gupta et al. 2018, strain LTA-388
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.