STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO08396.1Transcriptional regulator. (188 aa)    
Predicted Functional Partners:
CDO08395.1
Integral membrane protein, YccS/YhfK family.
       0.739
CDO08397.1
TetR family transcriptional regulator.
       0.525
CDO08831.1
RDD domain-containing protein.
  
     0.502
CDO11500.1
MMPL domain-containing protein.
  
     0.455
CDO09596.1
Protein-disulfide isomerase.
  
     0.445
CDO06818.1
CalR9 protein.
  
     0.429
CDO11503.1
Thioesterase superfamily protein.
  
     0.429
CDO08627.1
TetR family transcriptional regulator.
  
     0.422
CDO06394.1
Putative membrane protein.
  
     0.419
CDO09125.1
Hypothetical protein.
  
     0.416
Your Current Organism:
Mycolicibacterium cosmeticum
NCBI taxonomy Id: 258533
Other names: ATCC BAA-878, CIP 108170, DSM 44829, JCM 14739, M. cosmeticum, Mycobacterium cosmeticum, Mycobacterium cosmeticum Cooksey et al. 2004, Mycobacterium oesypum, Mycolicibacterium cosmeticum (Cooksey et al. 2004) Gupta et al. 2018, strain LTA-388
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