STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDO10092.1Lipid A core-O-antigen ligase. (502 aa)    
Predicted Functional Partners:
CDO07008.1
Sugar transferase.
  
  
 0.916
CDO10099.1
Undecaprenyl-phosphate galactose phosphotransferase.
  
  
 0.916
CDO11395.1
Sugar transferase.
  
  
 0.916
CDO08056.1
Hypothetical protein.
  
  
 0.853
CDO11398.1
dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose.
  
  
 0.754
CDO10093.1
Capsular exopolysaccharide biosynthesis protein.
  
  
 0.634
CDO10095.1
Lipopolysaccharide biosynthesis.
  
  
 0.634
CDO10057.1
Transferase.
    
  0.594
CDO10058.1
Transferase.
  
 
 0.569
CDO10062.1
Transferase.
  
 
 0.569
Your Current Organism:
Mycolicibacterium cosmeticum
NCBI taxonomy Id: 258533
Other names: ATCC BAA-878, CIP 108170, DSM 44829, JCM 14739, M. cosmeticum, Mycobacterium cosmeticum, Mycobacterium cosmeticum Cooksey et al. 2004, Mycobacterium oesypum, Mycolicibacterium cosmeticum (Cooksey et al. 2004) Gupta et al. 2018, strain LTA-388
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