Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kaiCCircadian clock protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (563 aa)    
Predicted Functional Partners:
kaiB
Circadian clock protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.998
RPA0007
Putative signal transduction histidine kinase with PAS/PAC domains.
 
    0.916
dnaB
Replicative DNA helicase (dnaB); Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily.
      
 0.780
glpR
Glycerol-3-phosphate regulon repressor glpR, DeoR family.
      
 0.740
recA
Recombination protein recA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
      
 0.732
phyB1
Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB1.
 
 
 0.611
phyB3
Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB3; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.607
phyB2
Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB2.
 
 
 
 0.601
phyB5
Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB5.
   
 
 0.593
RPA2434
Sensor histidine kinase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.567
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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