Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
rdxI,Putative cation (heavy metal) transporting ATPase. (732 aa)    
Predicted Functional Partners:
rdxH,
Conserved hypothetical protein.
 
  
 0.982
ccoO,
Cytochrome-c oxidase fixO chain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.973
rdxS,
Possible fixS.
 
  
 0.961
fixG,
4Fe-4S ferredoxin, iron-sulfur binding domain.
 
  
 0.959
ccoP,
Cytochrome-c oxidase fixP chain; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
 
  
 0.945
ccoN,
Cytochrome-c oxidase fixN chain, heme and copper binding subunit; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.942
fixG
Nitrogen fixation protein fixG, homologous to rdxB of R. sphaeroides; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
  
 0.916
RPA0011
Conserved hypothetical protein.
  
    0.773
trbJ
Putative conjugal transfer protein trbJ.
      
 0.740
ccoQ,
Cytochrome oxidase subunit, small membrane protein.
  
  
 0.595
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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