Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RPA0029Conserved hypothetical protein. (628 aa)    
Predicted Functional Partners:
RPA4294
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.702
RPA0030
Bacterial Sun/eukaryotic nucleolar Nop1/Nop2; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
    0.698
RPA0280
Unknown protein; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
  
     0.695
RPA0801
Conserved hypothetical protein.
  
     0.687
purH
Bifunctional purine biosynthesis protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
       0.658
lptD
Organic solvent tolerance protein homolog; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
     0.616
RPA0053
Conserved hypothetical protein.
  
     0.595
exoS,
Two component sensor histidine kinase.
  
     0.591
RPA0078
Protein of unknown function UPF0079; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
   
 0.589
RPA0075
Conserved hypothetical protein.
  
     0.583
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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