oppC protein (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

oppC

Putative ABC transporter permease protein. (293 aa)

Predicted Functional Partners:

oppF

0.997

oppD

0.997

RPA0755

0.987

RPA1444

0.987

RPA1445

0.986

RPA0758

0.983

RPA2330

0.976

RPA2643

0.976

RPA1214

0.973

RPA1470

0.972

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA0755	RPA0758	RPA0755	RPA0758	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	0.911
RPA0755	RPA1214	RPA0755	RPA1214	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.576
RPA0755	RPA1470	RPA0755	RPA1470	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative dipeptide ABC transporter; Belongs to the ABC transporter superfamily.	0.588
RPA0755	RPA2330	RPA0755	RPA2330	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.578
RPA0755	RPA2643	RPA0755	RPA2643	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative ABC transporter ATP-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the ABC transporter superfamily.	0.577
RPA0755	oppC	RPA0755	RPA0100	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative ABC transporter permease protein.	0.987
RPA0758	RPA0755	RPA0758	RPA0755	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	0.911
RPA0758	RPA1444	RPA0758	RPA1444	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative oligopeptide binding protein precursor; Belongs to the ABC transporter superfamily.	0.641
RPA0758	RPA1445	RPA0758	RPA1445	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.625
RPA0758	oppC	RPA0758	RPA0100	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative ABC transporter permease protein.	0.983
RPA0758	oppD	RPA0758	RPA0099	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Putative oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.	0.667
RPA0758	oppF	RPA0758	RPA0098	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.	0.632
RPA1214	RPA0755	RPA1214	RPA0755	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	0.576
RPA1214	RPA1444	RPA1214	RPA1444	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative oligopeptide binding protein precursor; Belongs to the ABC transporter superfamily.	0.576
RPA1214	RPA1445	RPA1214	RPA1445	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative oligopeptide transport ATP-binding protein; Belongs to the ABC transporter superfamily.	0.563
RPA1214	oppC	RPA1214	RPA0100	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative ABC transporter permease protein.	0.973
RPA1214	oppD	RPA1214	RPA0099	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Putative oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.	0.579
RPA1214	oppF	RPA1214	RPA0098	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.	0.576
RPA1444	RPA0758	RPA1444	RPA0758	Putative oligopeptide binding protein precursor; Belongs to the ABC transporter superfamily.	Putative oligopeptide ABC transporter, ATP-binding component; Belongs to the ABC transporter superfamily.	0.641
RPA1444	RPA1214	RPA1444	RPA1214	Putative oligopeptide binding protein precursor; Belongs to the ABC transporter superfamily.	Putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.	0.576