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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppBPutative dipeptide transport system permease protein 1. (326 aa)    
Predicted Functional Partners:
oppD
Putative oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 0.971
oppF
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 0.967
oppC
Putative ABC transporter permease protein.
  
 0.966
oppA
Putative ABC transporter oligopeptide-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.959
RPA1446
Possible dipeptide ABC transporter (dipeptide-binding protein); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.916
RPA1448
Putative oligopeptide ABC transporter (permease).
  
 0.909
RPA1215
Putative ABC transporter, permease protein.
  
 0.901
RPA1471
Putative dipeptide ABC transporter (permease).
  
 0.897
RPA2329
Putative ABC transporter permease protein.
  
 0.893
RPA0759
Putative oligopeptide ABC transporter, permease component.
  
 0.889
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.