STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppAPutative ABC transporter oligopeptide-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (533 aa)    
Predicted Functional Partners:
oppB
Putative dipeptide transport system permease protein 1.
 
 0.963
oppC
Putative ABC transporter permease protein.
 
 0.955
RPA2329
Putative ABC transporter permease protein.
 
 0.888
RPA2645
Putative ABC transporter permease protein.
 
 0.888
RPA2328
Putative ABC transporter permease protein.
 
 0.887
RPA2644
Putative ABC transporter permease protein.
 
 0.886
oppD
Putative oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 
 0.847
RPA1447
Putative oligopeptide ABC transporter (permease).
 
 0.831
RPA1216
Putative ABC transporter, permease protein.
 
 0.827
oppF
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
 
 
 0.826
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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