Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RPA0104Amidohydrolase. (547 aa)    
Predicted Functional Partners:
RPA0103
Cobalamin synthesis protein/P47K.
    
 0.824
oppA
Putative ABC transporter oligopeptide-binding protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
     0.799
RPA2101
Conserved hypothetical protein; COGs COG1574.
  
    0.551
oppC
Putative ABC transporter permease protein.
 
     0.539
RPA0105
Transcriptional regulator, GntR family with aminotransferase domain.
 
     0.539
oppB
Putative dipeptide transport system permease protein 1.
       0.495
oppD
Putative oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
  
    0.472
oppF
Oligopeptide ABC transporter (ATP-binding protein); Belongs to the ABC transporter superfamily.
       0.459
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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