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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phyB3Bacteriophytochrome (light-regulated signal transduction histidine kinase), PhyB3; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (759 aa)    
Predicted Functional Partners:
RPA0123
Possible KTN NAD-binding domain involved with K+ transport.
 
    0.814
kaiC
Circadian clock protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.730
RPA4417
Sensor histidine kinase with PAS/PAC and response regulator receiver domains.
 
0.709
rphyB
Response regulator receiver (CheY-like protein).
 
  
 0.687
RPA0583
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.679
RPA1681
Sensor histidine kinase with a response regulator receiver domain.
 
0.678
RPA0494
Sensor histidine kinase with PAS/PAC and Response regulator receiver domains.
 
 
 0.675
RPA1558
Sensor histidine kinase with multiple PAS/PAC and a response regulator receiver domain.
 
0.660
RPA2107
Sensor histidine kinase with a GAF, a Ser/Thr protein kinase, and an unknown domain.
 
  
 0.643
RPA0215
Possible general stress protein 26; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
    0.641
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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