Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
cheY1Response regulator receiver, CheY1; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (121 aa)    
Predicted Functional Partners:
cheA1
Multidomain chemotaxis histidine kinase CheA1 (Hpt, CheA, & CheW domains).
 0.999
cheW1-1
Chemotaxis signal transduction/oligomerization protein CheW1-1.
 
 0.990
cheW1-3
Chemotaxis signal transduction/oligomerization protein CheW1-2.
 
 0.979
RPA0139
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 0.958
RPA0144
Sulfate transporter/antisigma-factor antagonist domain.
  
  
 0.953
RPA1144
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.940
RPA0136
Methyl-accepting chemotaxis receptor/sensory transducer; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
 
 
 0.936
cheA2
Multidomain chemotaxis histidine kinase CheA2 (Hpt, CheA, CheW, & Resp. Reg. Rec. domains); Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
0.936
fliY
Putative flagellar motor switch protein; FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation. Belongs to the FliN/MopA/SpaO family.
  
 0.932
RPA3168
Possible flgaellar switch protein FliN.
  
 0.932
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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