STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPA0145Metal dependent phosphohydrolase with a response regulator receiver domain; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished. (388 aa)    
Predicted Functional Partners:
RPA0767
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
 
 0.977
RPA3994
Putative diguanylate cyclase (GGDEF).
  
 0.970
RPA2476
Putative diguanylate cyclase (GGDEF).
  
 0.969
RPA3792
Putative diguanylate cyclase (GGDEF).
  
 0.967
RPA2984
Putative diguanylate cyclase (GGDEF).
  
 0.964
RPA4790
Response regulator receiver:histidine kinase; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
 0.960
RPA2769
Putative diguanylate cyclase (GGDEF).
  
 0.957
RPA3076
Putative diguanylate cyclase (GGDEF).
  
 0.957
RPA3832
Putative diguanylate cyclase (GGDEF) with PAS/PAC domain.
 
 0.946
RPA3132
Putative diguanylate cyclase (GGDEF) with response regulator receiver domain.
 
  
0.937
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.