Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
RPA0152Protein of unknown function, UPF0066. (167 aa)    
Predicted Functional Partners:
RPA0151
Possible iron ABC transporter periplasmic binding protein.
 
     0.865
RPA0149
Possible ABC-type iron-siderophore transport system ATP-binding protein.
  
    0.814
RPA0150
Putative ABC transporter, iron, hemin permease homolog; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
       0.811
tRNA-Ser1
tRNA-Ser; Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane.
      
 0.741
RPA0148
Conserved hypothetical protein.
 
     0.740
RPA0147
Transcriptional regulator, ModE family.
       0.555
rpsL
30S ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy.
      
 0.423
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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