Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RPA0153Possible outer membrane receptor for Fe transport. (727 aa)    
Predicted Functional Partners:
RPA0156
tonB like protein.
 
 
 
 0.761
RPA2801
Collagen triple helix repeat; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
   
 
 0.741
RPA4177
Conserved hypothetical protein; InterPro IPR000694.
   
 
 0.741
RPA0154
Possible MotA/TolQ/ExbB proton channel family.
 
  
 0.704
RPA1353
Conserved hypothetical protein; InterPro IPR000694.
 
 
 
 0.615
RPA0155
Putative tolR/exbD protein.
     
 0.611
RPA1345
Conserved hypothetical protein.
 
 
 0.598
RPA0147
Transcriptional regulator, ModE family.
 
     0.597
RPA1338
Conserved hypothetical protein.
 
 
 
 0.592
fiu
Putative outer membrane receptor for iron transport; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
   
 0.585
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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