RPA0160 protein (Rhodopseudomonas palustris CGA009)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RPA0160

Possible acetyltransferases. (199 aa)

Predicted Functional Partners:

rpmA,

0.691

mutT

0.625

rplU,

0.597

hslU

0.566

rnc

0.564

RPA0841

0.539

Your Current Organism:

Rhodopseudomonas palustris CGA009

NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RPA0160	RPA0841	RPA0160	RPA0841	Possible acetyltransferases.	Putative ribosomal-protein-alanine N-acetyltransferase.	0.539
RPA0160	hslU	RPA0160	RPA0306	Possible acetyltransferases.	Heat shock protein HslU, proteasome-related ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.	0.566
RPA0160	mutT	RPA0160	RPA0594	Possible acetyltransferases.	Putative mutator protein mutT.	0.625
RPA0160	rnc	RPA0160	RPA2697	Possible acetyltransferases.	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.564
RPA0160	rplU,	RPA0160	RPA0158	Possible acetyltransferases.	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	0.597
RPA0160	rpmA,	RPA0160	RPA0159	Possible acetyltransferases.	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	0.691
RPA0841	RPA0160	RPA0841	RPA0160	Putative ribosomal-protein-alanine N-acetyltransferase.	Possible acetyltransferases.	0.539
RPA0841	rnc	RPA0841	RPA2697	Putative ribosomal-protein-alanine N-acetyltransferase.	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.564
hslU	RPA0160	RPA0306	RPA0160	Heat shock protein HslU, proteasome-related ATPase subunit; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis.	Possible acetyltransferases.	0.566
mutT	RPA0160	RPA0594	RPA0160	Putative mutator protein mutT.	Possible acetyltransferases.	0.625
rnc	RPA0160	RPA2697	RPA0160	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Possible acetyltransferases.	0.564
rnc	RPA0841	RPA2697	RPA0841	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Putative ribosomal-protein-alanine N-acetyltransferase.	0.564
rnc	rplU,	RPA2697	RPA0158	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	0.756
rnc	rpmA,	RPA2697	RPA0159	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	0.917
rplU,	RPA0160	RPA0158	RPA0160	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	Possible acetyltransferases.	0.597
rplU,	rnc	RPA0158	RPA2697	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.756
rplU,	rpmA,	RPA0158	RPA0159	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	0.998
rpmA,	RPA0160	RPA0159	RPA0160	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	Possible acetyltransferases.	0.691
rpmA,	rnc	RPA0159	RPA2697	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	Putative ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.	0.917
rpmA,	rplU,	RPA0159	RPA0158	Ribosomal protein L27; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished; Belongs to the bacterial ribosomal protein bL27 family.	Putative ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20.	0.998