Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RPA0170Conserved hypothetical protein; COGs COG2861. (412 aa)    
Predicted Functional Partners:
RPA3910
Conserved hypothetical protein; COGs COG0085.
 
     0.769
RPA3382
Conserved hypothetical protein.
  
     0.751
RPA3891
Unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.750
RPA4737
Conserved hypothetical protein.
  
     0.741
RPA3420
Conserved unknown protein.
  
     0.740
RPA1508
Conserved hypothetical protein.
  
     0.737
RPA3676
Putative type IV prepilin peptidase, cpaA.
  
     0.726
RPA3908
Conserved unknown protein; Observed by proteomics; Citation: Proteomics from VerBerkmoes et al. (2003) unpublished.
  
     0.719
RPA0168
Putative filament-A precursor.
 
     0.716
RPA3684
TPR repeat.
 
     0.711
Your Current Organism:
Rhodopseudomonas palustris CGA009
NCBI taxonomy Id: 258594
Other names: R. palustris CGA009, Rhodopseudomonas palustris str. CGA009, Rhodopseudomonas palustris strain CGA009
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